Table S4. Inversions detected from stocks via cytology (DGRP) or from genomes via bioinformatics. Updated 9th June 2014. Note that in the case of DPGP2 and DPGP3 haploid embryo genomes, live stocks may harbor undetected inversion polymorphism. "INV/ST" indicates known polymorphism. "INV/?" indicates that inverted reads were detected, but the genome was heterozygous in this region. Blank cells indicate inversions that were untested or unreported for this genome/stock. Genome In(1)A In(1)Be In(2L)t In(2R)NS In(3L)P In(3R)K In(3R)Mo In(3R)P In(3L)Ok In(2R)Y1 In(2R)Y2 In(2R)Y3 In(2R)Y4 In(2R)Y5 In(2R)Y6 In(2R)Y7 In(3L)M In(3L)Y In(3R)C DGRP: stocks cytologically tested for inversions as described by Huang et al. 2014 Genome Research RAL_21 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_26 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_28 ST INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_31 ST ST INV/ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_32 INV ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_38 ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_40 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_41 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_42 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_45 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_48 ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_49 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_57 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_59 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_69 ST INV ST ST ST ST ST ST ST ST ST ST ST ST INV/ST ST RAL_73 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_75 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_83 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_85 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_88 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_91 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_93 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_100 INV/ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST ST RAL_101 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_105 ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST ST RAL_109 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_129 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_136 ST ST INV/ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_138 ST ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST RAL_142 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_149 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_153 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_158 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_161 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_176 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_177 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_181 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_189 ST ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST RAL_195 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_208 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_217 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_223 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_227 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_228 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_229 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_233 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_235 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_237 INV/ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_239 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_256 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_280 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_287 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_301 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_303 INV/ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_304 ST INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_306 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_307 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_309 ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_310 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_313 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_315 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_317 ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST RAL_318 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_319 ST ST ST ST ST ST ST ST ST ST INV/ST ST ST ST ST ST RAL_320 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_321 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_324 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_325 ST ST ST ST ST ST ST ST ST ST ST INV/ST INV/ST ST ST ST RAL_332 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_335 ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST RAL_336 INV/ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_338 INV/ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_340 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_348 INV ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_350 INV ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_352 INV/ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_354 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_355 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_356 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_357 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_358 INV ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_359 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_360 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_361 ST ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST RAL_362 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_365 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_367 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_370 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_371 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_373 ST ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST RAL_374 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_375 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_377 INV/ST INV/ST ST ST ST ST ST INV/ST ST ST ST ST ST ST ST ST RAL_379 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_380 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_381 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_382 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_383 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_385 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_386 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_390 INV ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST RAL_391 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_392 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_395 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_397 ST ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST RAL_399 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_405 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_406 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_409 ST INV ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_426 INV/ST INV/ST INV ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_427 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_437 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_439 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_440 ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_441 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_443 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_461 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_486 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_491 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_492 INV/ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST RAL_502 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_505 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_508 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_509 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_513 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_517 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_528 INV/ST INV/ST ST ST ST ST ST ST INV/ST INV/ST ST ST ST ST ST ST RAL_530 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_531 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_535 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_551 ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST RAL_555 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_559 ST ST ST INV/ST INV/ST ST ST ST ST ST ST ST ST ST ST ST RAL_563 INV/ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_566 ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST INV/ST RAL_584 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_589 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_595 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_596 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_627 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_630 INV ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST RAL_634 ST ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST RAL_639 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_642 ST INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_646 ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST ST RAL_703 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_705 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_707 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_712 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_714 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_716 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_721 ST ST INV ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_727 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_730 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_732 ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_737 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_738 ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST RAL_748 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_757 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_761 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_765 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_774 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_776 ST ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST RAL_783 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_786 ST ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST RAL_787 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_790 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_796 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_799 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_801 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_802 INV/ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_804 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_805 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_808 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_810 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_812 INV/ST INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_818 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_819 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_820 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_821 ST INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_822 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_832 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_837 INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_843 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_849 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_850 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_852 ST INV ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_853 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_855 ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST ST RAL_857 ST INV/ST ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST RAL_859 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_861 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_879 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_882 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_884 ST ST ST ST ST INV/ST ST ST ST ST ST ST ST ST ST ST RAL_887 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_890 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_892 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_894 INV/ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_897 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_900 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_907 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST INV/ST RAL_908 ST ST ST ST INV ST ST ST ST ST ST ST ST ST ST ST RAL_911 ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST ST RAL_913 ST ST ST INV/ST ST ST ST ST ST ST ST ST ST INV/ST ST ST DPGP1: bioinformatically tested for inversions using the method of Corbett-Detig et al. 2012 Genetics MW11-1 ST ST MW28-1 ST ST MW38-1 ST ST MW46-1 ST ST MW6-1 ST ST MW63-1 INV ST MW9-1 ST ST MW38-2 ST ST MW6-2 INV ST MW9-2 ST ST MW28-2-3 INV INV ST INV ST ST ST MW56-2-3 ST ST ST INV ST ST ST MW63-2-3 INV INV ST ST ST ST ST MW27-3 ST ST ST ST INV MW6-3 ST INV ST ST ST DPGP2: genomes bioinformatically tested for inversions using the method of Corbett-Detig et al. 2012 Genetics. Haploid or homozygous except for ZK (and non-target chromosomes from extraction lines). CK1 ST ST ST ST ST ST ST INV ST CK2 ST ST ST ST ST ST ST ST ST CO1 ST ST ST ST ST INV ST ST ST CO10b-3 ST INV ST ST ST CO10N ST ST ST ST ST INV ST ST ST CO13N ST ST ST ST ST INV ST ST ST CO14 ST ST INV ST ST ST ST INV ST CO15N ST ST ST ST ST INV ST ST ST CO16 ST ST ST ST ST INV ST ST ST CO16-3 ST ST ST INV ST CO2 ST ST ST ST ST INV ST ST ST CO4N ST ST ST ST ST INV ST ST ST CO8b-3 ST INV ST ST ST CO8N ST ST ST ST ST INV ST ST ST CO9N ST ST ST ST ST INV ST ST ST ED10N ST ST ST ST ST ST ST ST ST ED19-1-3 ST ST ST ST ST ST ST ED2 ST ST ST ST ST ST ST ST ST ED3 ST ST ST ST ST ST ST ST ST ED55-2 ST ST ED56-2 ST ST ED5N ST ST ST ST ST ST ST ST ST ED6N ST ST ST ST ST ST ST ST ST EZ2 ST ST INV ST ST ST ST ST ST EZ25 ST ST INV ST ST ST ST ST ST EZ5N ST ST ST ST ST ST ST ST ST EZ63-1-3 ST ST ST ST ST ST ST EZ9N ST ST INV ST ST ST ST ST ST FR14 ST ST ST ST ST ST ST ST ST FR151 ST ST ST ST ST ST ST ST ST FR180 ST ST INV ST ST ST ST INV ST FR207 ST ST ST ST ST ST ST ST ST FR217 ST ST ST ST INV INV ST ST ST FR229 ST ST ST ST ST ST ST INV ST FR310 ST ST ST ST ST ST INV ST ST FR361 ST ST ST ST INV ST ST INV ST FR70 ST ST ST ST ST ST ST ST ST GA125 ST ST INV ST ST INV ST ST ST GA129 ST ST INV ST ST ST ST ST ST GA130 ST ST ST ST ST ST ST ST ST GA132 ST ST ST ST ST ST ST INV ST GA141 ST ST INV ST ST ST ST ST ST GA145 ST ST INV ST ST ST ST ST ST GA160 ST ST INV ST ST ST ST INV ST GA185 ST ST ST ST ST ST ST INV ST GA187 ST ST ST ST ST INV ST GA191 ST INV ST ST ST ST ST ST ST GU10 ST ST ST ST ST INV ST ST ST GU11-3 ST ST ST INV ST GU2 ST ST ST ST ST ST ST ST ST GU3-3 ST ST ST ST ST ST ST ST ST GU6 ST ST ST ST ST INV ST ST ST GU7 ST ST INV ST ST ST ST INV ST GU9 ST ST ST ST ST ST ST INV ST KN133N ST INV INV ST ST ST ST ST ST KN20N ST ST ST ST ST INV ST ST ST KN34 ST ST ST ST ST ST ST ST ST KN35 ST ST INV ST ST ST ST ST ST KN6 ST ST ST ST ST ST ST ST ST KN73-1-3 ST ST ST ST ST ST ST KO10-1-3 ST ST ST ST ST ST ST KO2-1-3 ST ST ST ST ST ST ST KO6-1-3 ST ST ST ST ST ST ST KR39 ST INV INV ST ST ST ST ST ST KR42 ST ST INV INV ST ST ST ST ST KR4N INV ST INV ST ST ST ST ST ST KR54-1-3 ST ST ST ST ST INV ST KR68-1-3 ST ST ST ST ST ST ST KR7 ST ST INV ST ST ST ST ST ST KT1 ST ST ST ST ST ST ST ST ST KT6 ST ST ST INV ST ST ST ST ST NG10N ST ST INV ST INV ST ST INV ST NG1N ST ST INV INV ST INV ST ST ST NG3N ST ST INV ST INV ST ST ST ST NG6N ST ST ST ST ST ST ST ST ST NG7 ST ST ST ST ST ST ST ST ST NG9 ST ST INV INV INV ST ST ST ST RC1 ST ST ST ST ST ST ST ST ST RC5 ST ST ST ST ST ST ST ST ST RG10 ST INV ST ST ST ST ST ST ST RG11N ST INV ST ST ST ST ST ST ST RG13N ST ST ST ST ST ST ST ST ST RG15 ST ST ST ST ST ST ST ST ST RG18N ST ST ST ST ST ST ST INV ST RG19 ST ST ST ST ST ST ST ST ST RG2 ST ST ST ST ST ST ST ST ST RG21N ST INV ST ST ST ST ST ST ST RG22 ST ST ST ST ST ST ST ST ST RG24 ST ST ST ST ST ST ST ST ST RG25 ST ST ST ST ST ST ST INV ST RG28 ST ST ST ST ST ST ST ST ST RG3 ST ST INV INV ST ST ST ST ST RG32N ST ST ST ST ST ST ST ST ST RG33 ST ST ST ST ST ST ST ST ST RG34 ST ST ST ST ST ST ST ST ST RG35 ST ST ST ST ST ST ST ST ST RG36 ST ST INV ST ST ST ST ST ST RG37N ST ST INV ST ST ST ST ST ST RG38N ST ST ST ST ST ST ST ST ST RG39 ST ST ST ST ST ST ST ST ST RG4N ST ST ST ST ST ST ST ST ST RG5 ST ST ST ST ST ST ST INV ST RG6N ST ST ST ST ST ST ST ST ST RG7 ST ST ST ST ST ST ST ST ST RG8 ST ST ST ST ST ST ST ST ST RG9 ST ST ST ST ST ST ST INV ST SP173 ST ST ST ST ST ST ST ST ST SP188 ST ST ST ST ST ST ST ST ST SP221 ST ST INV INV ST ST ST ST ST SP235 ST ST ST ST ST ST ST ST ST SP241 ST ST ST ST ST ST ST ST ST SP254 ST ST ST ST ST ST ST ST ST SP80 ST ST ST ST ST ST ST ST ST TZ10 INV ST INV ST ST ST ST ST ST TZ14 INV ST INV ST ST INV ST ST ST TZ8 INV ST INV ST ST ST ST ST ST UG17-3 ST ST ST ST ST UG19 ST ST ST ST ST ST ST ST ST UG28N ST ST ST ST ST ST ST ST ST UG40-3 ST ST ST ST ST UG5N ST ST ST ST ST ST ST ST ST UG7 ST ST ST ST ST ST ST ST ST UM118 ST INV INV ST ST ST ST ST ST UM37 ST ST ST ST ST INV ST ST ST UM526 ST ST INV ST ST ST ST ST ST ZL130 ST INV ST ST ST ST ST ST ST ZO12 ST INV ST ST ST ST ST ST ST ZO65 INV ST INV INV ST ST ST ST ST ZS11 ST ST INV ST ST ST ST ST ST ZS37 INV ST ST ST ST INV ST ST ST ZS5 INV ST ST INV ST ST ST ST ST ZS56 ST ST ST ST ST ST ST ST ST ZK131 INV ST ? ? ST INV ST ST ST ZK186 ST ST ? ? ST ST ST ST ST ZK84 ST ST ? ? ? ? ? ? ? DPGP3: (haploid) genomes bioinformatically tested for inversions using the method of Corbett-Detig et al. 2012 Genetics. ZI10 ST ST ST INV ST ST ST ST ST ZI103 ST ST ST ST ST INV ST ST ST ZI104 ST ST ST ST ST ST ST ST ST ZI114N ST ST INV ST ST ST ST ST INV ZI117 ST ST INV ST ST ST ST ST ST ZI118N ST ST INV ST ST ST ST ST ST ZI126 ST ST ST ST ST ST ST ST ST ZI129 ST ST ST ST ST ST ST ST INV ZI134N ST ST ST ST ST ST ST ST ST ZI136 ST ST INV INV ST ST ST ST INV ZI138 ST ST ST ST ST ST ST ST ST ZI152 ST ST ST ST ST ST ST ST ST ZI157 ST ST ST ST ST ST ST ST ST ZI161 ST ST INV ST ST ST ST ST INV ZI164 ST ST ST ST ST ST ST ST ST ZI165 ST ST ST ST ST ST ST ST INV ZI167 ST ST ST ST ST ST ST ST ST ZI170 ST ST ST ST ST ST ST ST ST ZI172 ST ST ST ST ST ST ST ST ST ZI173 ST ST ST ST ST ST ST ST INV ZI176 ST ST ST ST ST ST ST ST ST ZI177 ST ST ST ST ST INV ST ST ST ZI178 ST ST ST ST ST ST ST ST INV ZI179 ST ST ST INV ST ST ST ST ST ZI181 ST ST ST ST ST ST ST ST ST ZI182 ST ST ST INV ST ST ST ST INV ZI184 ST ST ST ST ST ST ST ST ST ZI185 ST ST ST ST ST ST ST ST ST ZI188 ST ST ST ST ST INV ST ST ST ZI190 ST ST ST ST ST INV ST ST ST ZI191 ST ST ST ST ST ST ST ST ST ZI193 ST ST ST ST ST ST ST ST ST ZI194 ST ST ST ST ST ST ST ST INV ZI196 ST ST ST ST ST ST ST ST ST ZI197N ST ST ST ST ST INV ST ST ST ZI198 ST ST INV ST ST ST ST ST ST ZI199 ST ST ST ST ST INV ST ST ST ZI200 ST ST ST ST ST ST ST ST ST ZI202 ST ST ST ST ST INV ST ST ST ZI206 ST ST INV ST ST ST ST ST ST ZI207 ST ST ST ST ST ST ST ST ST ZI210 ST ST ST ST ST ST ST ST INV ZI211 ST ST ST ST ST ST ST ST ST ZI212 ST ST ST ST ST ST ST ST ST ZI213 ST ST ST ST ST ST ST ST INV ZI214 ST ST ST ST ST INV ST ST ST ZI216N ST ST ST INV ST ST ST ST ST ZI218 ST ST ST ST ST INV ST ST ST ZI219 ST ST ST ST ST ST ST ST INV ZI220 ST ST ST ST ST ST ST INV ST ZI221 ST ST ST ST ST ST ST INV ST ZI225 ST ST ST ST ST ST ST ST ST ZI226 ST ST ST INV ST ST ST ST ST ZI227 ST ST INV ST ST INV ST ST ST ZI228 ST ST ST ST ST ST ST INV ST ZI230 ST ST ST ST ST INV ST ST ST ZI231 ST ST ST ST ST ST ST ST INV ZI232 ST ST INV ST ST ST ST ST ST ZI233 ST ST ST ST ST ST ST INV ST ZI235 ST ST INV INV ST ST ST ST ST ZI237 ST ST ST INV ST ST ST INV ST ZI239 ST ST ST ST ST ST ST ST INV ZI240 ST ST INV ST ST ST ST ST ST ZI241 ST ST ST ST ST INV ST ST ST ZI250 ST ST ST ST ST ST ST ST ST ZI251N ST ST ST ST ST ST ST ST ST ZI252 ST ST ST ST ST ST ST ST ST ZI253 ST ST INV ST ST ST ST ST ST ZI254N ST ST ST ST ST ST ST ST ST ZI255 ST ST ST INV ST ST ST ST ST ZI26 ST ST ST ST ST ST ST ST INV ZI261 ST ST ST ST ST ST ST ST ST ZI263 ST ST INV ST ST ST ST ST ST ZI264 ST ST ST ST ST ST ST INV ST ZI265 ST ST ST ST ST ST ST ST ST ZI267 ST ST ST ST ST INV ST ST ST ZI268 ST ST ST ST ST ST ST ST ST ZI269 ST ST INV INV ST ST ST ST ST ZI27 ST ST INV INV ST ST ST ST ST ZI271 ST ST ST ST ST ST ST ST ST ZI273N ST ST ST ST ST INV ST ST ST ZI276 ST ST INV INV ST ST ST ST ST ZI279 ST ST ST ST ST ST ST ST ST ZI28 INV ST ST ST ST ST ST ST ST ZI281 ST ST ST ST ST ST ST ST INV ZI284 ST ST INV ST ST INV ST ST ST ZI286 ST ST ST ST ST ST ST ST ST ZI291 INV ST ST ST ST ST ST INV ST ZI292 ST ST ST ST ST ST ST INV INV ZI293 ST ST ST ST ST ST ST INV INV ZI295 ST ST ST INV ST ST ST ST ST ZI296 ST ST ST ST ST INV ST ST ST ZI303 ST ST ST ST ST ST ST ST INV ZI311N ST ST ST ST ST ST ST ST ST ZI313 ST ST INV ST ST ST ST ST ST ZI314 ST ST ST ST ST ST ST ST INV ZI316 ST ST INV ST ST ST ST ST ST ZI317 ST ST ST ST ST INV ST ST ST ZI319 ST ST ST ST ST ST ST INV ST ZI31N ST ST ST ST ST ST ST ST ST ZI320 ST ST ST ST ST ST ST ST ST ZI321 ST ST INV INV ST ST ST ST ST ZI324 ST ST ST ST ST ST ST ST ST ZI329 ST ST ST ST ST ST ST ST ST ZI33 ST ST ST ST ST ST ST ST ST ZI332 ST ST ST ST ST ST ST ST ST ZI333 ST ST ST ST ST INV ST ST ST ZI335 ST ST ST ST ST ST ST ST ST ZI336 ST ST ST ST ST ST ST ST ST ZI339 ST ST INV ST ST ST ST ST INV ZI341 ST ST ST ST ST ST ST INV INV ZI342 ST ST INV ST ST ST ST ST ST ZI344 ST ST ST ST ST ST ST ST ST ZI348 ST ST ST ST ST ST ST ST ST ZI351 ST ST ST INV ST INV ST ST ST ZI352 ST ST INV ST ST INV ST ST ST ZI353 ST ST ST ST ST INV ST ST ST ZI357N ST ST INV INV ST ST ST ST INV ZI358 ST ST ST ST ST ST ST ST INV ZI359 ST ST ST ST ST ST ST ST ST ZI362 ST ST ST ST ST ST ST INV ST ZI364 ST ST ST INV ST ST ST ST INV ZI365 ST ST ST ST ST ST ST ST INV ZI368 ST ST ST ST ST INV ST ST ST ZI370 ST ST ST ST ST ST ST ST ST ZI373 ST ST ST ST ST ST ST ST ST ZI374 ST ST INV ST ST ST ST ST ST ZI377 ST ST ST ST ST ST ST ST ST ZI378 ST ST ST ST ST ST ST ST ST ZI379 ST ST ST ST ST INV ST ST ST ZI380 ST ST ST ST ST INV ST ST ST ZI381 ST ST ST ST ST INV ST ST ST ZI382 ST ST ST INV ST ST ST ZI384 ST ST ST ST ST ST ST INV INV ZI386 ST ST ST ST ST ST ST ST ST ZI388 ST ST ST ST ST ST ST ST INV ZI392 ST ST ST ST ST ST ST ST ST ZI394N ST ST INV ST ST ST ST ST ST ZI395 ST ST INV ST ST ST ST ST ST ZI396 ST ST INV ST ST INV ST ST ST ZI397N ST ST INV ST ST ST ST INV ST ZI398 ST ST ST ST ST ST ST ST ST ZI400 ST ST ST ST ST INV ST ST ST ZI402 ST ST ST ST ST ST ST ST ST ZI405 ST ST INV ST ST ST ST INV ST ZI413 ST ST ST ST ST ST ST ST ST ZI418N ST ST ST ST ST ST ST ST ST ZI420 ST ST ST ST ST ST ST ST ST ZI421 ST ST ST ST ST ST ST ST ST ZI429 ST ST ST ST ST INV ST ST ST ZI431 ST ST ST ST ST ST ST ST ST ZI433 ST ST ST ST ST ST ST ST ST ZI437 ST ST ST ST ST INV ST ST ST ZI443 ST ST ST ST ST INV ST ST ST ZI444 ST ST INV ST ST ST ST ST ST ZI445 ST ST INV ST ST ST ST ST ST ZI446 ST ST INV ST ST ST ST INV ST ZI447 INV ST ST ST ST ST ST ST ST ZI448 ST ST ST INV ST ST ST INV INV ZI453 ST ST ST ST ST ST ST ST ST ZI455N ST ST ST ST ST ST ST ST ST ZI456 ST ST INV ST ST ST ST ST ST ZI457 ST ST ST ST ST ST ST ST ST ZI458 ST ST ST ST ST ST ST ST INV ZI460 ST ST ST ST ST ST ST ST INV ZI466 ST ST ST INV ST ST ST ST INV ZI467 ST ST INV INV ST ST ST ST ST ZI468 ST ST ST ST ST ST ST ST ST ZI471 ST ST ST ST ST ST ST ST INV ZI472 ST ST ST ST ST ST ST ST ST ZI476 ST ST ST ST ST INV ST ST ST ZI477 ST ST ST ST ST ST ST ST ST ZI486 ST ST INV ST ST ST ST INV INV ZI488 ST ST INV ST ST ST ST ST ST ZI490 ST ST ST ST ST ST ST ST ST ZI491 ST ST ST ST ST ST ST ST ST ZI504 ST ST ST ST ST ST ST ST ST ZI505 ST ST INV ST ST ST ST INV ST ZI508 ST ST ST ST ST ST ST INV ST ZI50N ST ST ST ST ST ST ST ST ST ZI514N ST ST ST ST ST ST ST ST ST ZI517 ST ST ST ST ST ST ST ST ST ZI523 ST ST ST ST ST INV ST ST ST ZI524 ST ST INV INV ST ST ST ST ST ZI527 ST ST INV INV ST ST ST ST ST ZI530 ST ST INV INV ST ST ST ST INV ZI56 ST ST ST INV ST ST ST ST ST ZI59 ST ST ST ST ST INV ST ST ST ZI61 ST ST INV ST ST ST ST ST ST ZI68 ST ST ST ST ST ST ST ST ST ZI76 ST ST INV ST ST ST ST ST ST ZI81 ST ST INV ST ST ST ST INV ST ZI85 ST ST ST ST ST ST ST ST ST ZI86 ST ST ST ST ST ST ST ST ST ZI90 ST ST ST ST ST INV ST ST ST ZI91 ST ST ST ST ST ST ST ST ST ZI99 ST ST ST ST ST ST ST ST INV Pool Lab: genomes bioinformatically tested for inversions using the method of Corbett-Detig et al. 2012 Genetics. Haploid embryo except for EG and KM. EA119 ST ST ST ST ST ST ST ST ST EA3 ST ST ST ST ST ST ST ST ST EA49 ST ST ST ST ST ST ST ST ST EA71 ST ST ST ST ST ST ST ST ST EA87 ST ST ST ST ST ST ST ST ST EB132 ST ST ST ST ST ST ST ST ST EB148 ST ST ST ST ST ST ST ST ST EB18 ST ST ST ST ST ST ST ST ST EB237 ST ST ST ST ST INV ST ST ST EB25 ST ST ST ST ST ST ST ST ST EF120 ST ST ST ST ST ST ST ST ST EF2 ST ST ST ST ST ST ST ST ST EF39 ST ST ST ST ST ST ST ST ST EF65 ST ST ST ST ST ST ST ST ST EF78 ST ST ST ST ST ST ST ST ST EM239 ST ST ST ST ST ST ST ST ST EM40 ST ST ST ST ST ST ST ST ST EM6 ST ST ST ST ST ST ST ST ST ER11 ST ST ST ST ST ST ST ST ST ER156 ST ST ST ST ST ST ST ST ST ER32 ST ST ST ST ST ST ST ST ST ER63 ST ST ST ST ST ST ST ST ST ER85 ST ST ST ST ST ST ST ST ST SB10 ST ST ST ST ST ST ST ST ST SB16 ST ST INV ST ST ST ST ST ST SB26 ST ST INV ST ST ST ST ST ST SB31 ST ST ST ST ST ST ST ST ST SB51 ST ST ST ST ST ST ST ST INV SD145 ST ST ST INV ST ST ST ST ST SD45 ST ST INV ST ST ST ST ST ST SD67 ST ST ST ST ST ST ST ST ST SD82 ST ST ST ST ST ST ST SD98 ST ST ST ST ST ST ST ST ST SE16 INV ST ST ST ST ST ST ST ST SE55 ST ST INV INV ST ST ST ST ST SE63 ST ST INV ST ST ST ST ST ST SF110 ST ST INV ST ST ST ST ST ST SF332 ST ST ST INV ST ST ST ST ST SF428 ST ST INV ST ST ST ST INV ST SF447 ST ST ST ST ST ST ST INV ST SF7 ST ST ST ST ST ST ST UK10 ST ST ST ST ST ST ST ST ST UK120 ST ST ST ST ST INV ST UK2 ST ST ST ST ST ST ST INV ST UK57 ST ST INV INV ST ST ST ST ST UK73 ST ST ST ST ST ST ST ST ST EG40N ST ST INV/? ST INV/? ST ST ST ST EG69N ST ST INV ST INV/? ST INV ST ST EG73N ST ST INV ST INV ST ST ST ST KM106 ST INV ST ST INV/? ST ST INV/? ST KM36 ST INV ST ST ST (?) ST ST ST ST KM73 ST ST (?) ST ST ST ST ST ST (?) ST KM92 ST ST ST ST ST ST ST INV/? ST